2016 Lecture Slides

Introduction to Neuroanatomy & Experimental Design presented by John Jonides, University of Michigan

Jonides_Neuroanatomy_Pt 1

Jonides_Neuroanatomy_Pt 2

Jonides_Neuroanatomy_Pt 3

MRI Physics presented by Douglas C. Noll, University of Michigan

MRI Physics I Spins, Excitation, Relaxation

MRI Physics II: Gradients, Imaging

Recap of MRI Physics I & II andMRI Physics III: Hardware

The BOLD Response

Homework – Required for UM students taking for credit

Homework for Noll_Solutions

Noise and Artifacts in fMRI presented by Luis Hernandez-Garcia, University of Michigan

Noise and Artifacts in fMRI

Non-BOLD Methods: Arterial Spin Labeling presented by Luis Hernandez-Garcia, University of Michigan

Arterial Spin Labeling

Clinical Applications of fMRI presented by Benjamin Hampstead, University of Michigan

Clinical Applications of fMRI

Diffusion Tensor Imaging presented by Robert C. Welsh, University of Utah

Welsh_DTI.v1

Welsh_DTI.v2

Welsh_DTI.v3

Welsh_DTI.v4

SPM Introduction presented by Scott Peltier, University of Michigan

SPM Introcution

Introduction to Statistics presented by Jeanette Mumford, University of Wisconsin-Madison

Introduction to Statistics

Monday, Lecture 1 – Overview presented by Jeanette Mumford, University of Wisconsin-Madison

Overview – 3 per page

Mumford_overview_1perpage

Monday, Lecture 2 – General Linear Model presented by Jeanette Mumford, University of Wisconsin-Madison

General Linear Model – 3 per page

General linear model_1perpage

Monday, Lecture 3- First Level fMRI Modeling presented by Jeanette Mumford, University of Wisconsin-Madison

First Level fMRI Modeling – 3 per page

First Level fMRI Modeling_1perpage

Monday, Lecture 4 – Parametrically Modulated Regressors presented by Jeanette Mumford, University of Wisconsin-Madison

Parametrically modulated regressors (3 per page)

Parametrically Modulated Regressors (1 per page

Tuesday, Lecture 1 – Review of Monday presented by Jeanette Mumford, University of Wisconsin-Madison

Review

Tuesday, Lecture 2- Common Models and Contrasts presented by Jeanette Mumford, University of Wisconsin-Madison

Common Models and Contrasts

Resource – Mean Centering Guide

Tuesday, Lecture 3 – Efficiency and Design Optimization presented by Jeanette Mumford, University of Wisconsin-Madison

Efficiency and design optimization

Tuesday, Lecture 4 – Power Analysis presented by Jeanette Mumford, University of Wisconsin-Madison

Power Analysis (3 per page)

Power Analysis (1 per page)

Lecture 5, Tuesday, – The Reproducibility Problem presented by Jeanette Mumford, University of Wisconsin-Madison

The Reproducibility Problem (3 per page)

Reproducibility (1 per page)

Multi-voxel Pattern-based Real-time fMRI presented by Stephen LaConte, Virginia Tech

LaConte_Pattern-based real-time fMRI

Wednesday, Lecture 1 (1 per page)- Group Analysis presented by Jeanette Mumford, University of Wisconsin-Madison

Mumford_Group Analysis

Wednesday, Lecture 1 (3 per page)- Group Analysis presented by Jeanette Mumford, University of Wisconsin-Madison

Mumford_Group Analysis_3perpage

Wednesday, Lecture 2 (1 per page)- Controlling for Multiple Comparisons in Imaging Analysis presented by Jeanette Mumford, University of Wisconsin-Madison

Mumford_multiple_comparisons_1perpage

Wednesday, Lecture 2 (3 per page)-Controlling for Multiple Comparisons in Imaging Analysis presented by Jeanette Mumford, University of Wisconsin-Madison

Mumford_multiple_comparisons_3perpage

Wednesday, Lecture 3 (1 per page)- Cluster Failure: What’s that all about? presented by Jeanette Mumford, University of Wisconsin-Madison

Mumford_cluster_failure_1perpage

Wednesday, Lecture 3 (3 per page)-Cluster Failure: What’s that all about? presented by Jeanette Mumford, University of Wisconsin-Madison

Mumford_cluster_failure_3perpage

Wednesday, Lecture 4 (1 per page)- Circular Analyses –  presented by Jeanette Mumford, University of Wisconsin-Madison

Mumford_circular_analysis_1perpage

Wednesday, Lecture 4 (3 per page)-Circular Analyses –  presented by Jeanette Mumford, University of Wisconsin-Madison

Mumford_circular_analysis_3perpage

Flow Chart Circularity Guide

flowchart_circularity_guide

Thursday, Psychophysiological Interactions (PPI) presented by Jeanette Mumford, University of Wisconsin-Madison

Mumford_PPI – 1 per page

Mumford_PPI (3 per page)

Thursday, Effective Connectivity presented by Luis Hernandez-Garcia, University of Michigan

Effective Connectivity

Thursday, Investigations in Resting State Connectivity presented by Scott Peltier, University of Michigan

Peltier_Connectivity (3 per page)